Spatialize Phylogenetic Tree

Description

This functor predicts the phylogenetic beta-diversity patterns by using environmental predictors. For more details, see: Rosauer, D.F., Ferrier, S., Williams, K.J., Manion, G., Keogh, J.S., Laffan, S.W., 2014. Phylogenetic generalised dissimilarity modelling: a new approach to analysing and predicting spatial turnover in the phylogenetic composition of communities. Ecography (Cop.). 37, 21–32. https://doi.org/10.1111/j.1600-0587.2013.00466.x

Inputs

Name	Type	Description
Input Occurences	csv file	Csv file with species occurences (colunms sp, x, y).
Input Phylogenetic Tree	tre file	Filogenetic tree in format “.tre”
The Tree has branch lengths	Boolean Value Type	Choose the tipe of phylogentic tree
Input Mask	Map Filename Type	The filename of the shape of area of study.
Hexagon Size	Real Value Type	Define size of hexagons to sampling data
Minimum Number Of Samples	Real Value Type	Minimum number of samples in hexagon
Predictors	Folder	Folder with predictors raster files (variables) in geoTif format
Output folder	Folder	Folder to save outputs.
Use Geographical Distances	Boolean Value Type	Use geographical distances as predictors
Classify GDM	Boolean Value Type	Classify areas in GDM by unsupervised classification
Number Of Classes	Real Value Type	Number of classes in classification
Project In Another Scenario	Boolean Value Type	Project GDM in another scenario (future or past)
Folder Scenarios Raster	Folder	Folder with rasters for project in another scenario. The rasters should be named in the same way of predictors.
Weight Samples	Boolean Value Type	Weight samples by number of samples (for data with sampling bias)

Outputs

Name	Type	Description
Explained of Model	Real Value Type	Percentage of explanation of model
Map	Map Type	Map of GDM prediction

Group

BioDinamica

Internal Name

BioDinamica